Database and Motifs | High-scoring Motif Occurences | Debugging Information | Results in TSV Format | Results in GFF3 Format |
FIMO version 5.1.1, (Release date: Wed Jan 29 15:00:42 2020 -0800)
For further information on how to interpret these results please access http://meme-suite.org//doc/fimo-output-format.html.
To get a copy of the FIMO software please access http://meme-suite.org
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE sequence_1.fasta
Database contains 1 sequences, 30488 residues
MOTIFS MEME.html (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
TTAACGAACT | 10 | TTAACGAACT |
CKTGCTGC | 8 | CGTGCTGC |
AAGAGA | 6 | AAGAGA |
Random model letter frequencies (--nrdb--):
A 0.282 C 0.222 G 0.229 T 0.267
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
TTAACGAACT | MEME-1 | EF065510.1 | + | 58 | 67 | 1.36e-06 | 0.00828 | TTAACGAACT |
TTAACGAACT | MEME-1 | EF065510.1 | + | 21671 | 21680 | 1.36e-06 | 0.00828 | TTAACGAACT |
TTAACGAACT | MEME-1 | EF065510.1 | + | 25804 | 25813 | 1.36e-06 | 0.00828 | TTAACGAACT |
TTAACGAACT | MEME-1 | EF065510.1 | + | 26127 | 26136 | 1.36e-06 | 0.00828 | TTAACGAACT |
TTAACGAACT | MEME-1 | EF065510.1 | + | 28154 | 28163 | 1.36e-06 | 0.00828 | TTAACGAACT |
TTAACGAACT | MEME-1 | EF065510.1 | + | 27899 | 27908 | 1.58e-05 | 0.0804 | AAAACGAACT |
CKTGCTGC | MEME-2 | EF065510.1 | + | 4295 | 4302 | 2.03e-05 | 0.36 | CTTGCTGC |
TTAACGAACT | MEME-1 | EF065510.1 | + | 27149 | 27158 | 2.18e-05 | 0.095 | AGAACGAACT |
TTAACGAACT | MEME-1 | EF065510.1 | + | 28858 | 28867 | 3.13e-05 | 0.119 | TTAACGAATC |
CKTGCTGC | MEME-2 | EF065510.1 | + | 12881 | 12888 | 3.59e-05 | 0.36 | CGCGCTGC |
CKTGCTGC | MEME-2 | EF065510.1 | + | 27840 | 27847 | 3.59e-05 | 0.36 | CGCGCTGC |
CKTGCTGC | MEME-2 | EF065510.1 | + | 9784 | 9791 | 7.51e-05 | 0.565 | CGTGTTGC |
Command line:
fimo --oc . --verbosity 1 --thresh 1.0E-4 --norc MEME.html sequence_1.fasta
Settings:
output_directory = . | MEME file name = MEME.html | sequence file name = sequence_1.fasta |
background file name = --nrdb-- | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = false |
text only = false | scan both strands = false | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.